Recology

Posts

Scholarly metadata in R by Scott Chamberlain March 16, 2013 . . R ropensci metadata API .
Visualizing rOpenSci collaboration by Scott Chamberlain March 8, 2013 . . R ropensci github API .
Academia reboot by Scott Chamberlain February 22, 2013 . . academia .
Getting a simple tree via NCBI by Scott Chamberlain February 14, 2013 . . R phylogenetic .
testing ifttt recipe, ignore by Scott Chamberlain January 26, 2013 . . test .
Waiting for an API request to complete by Scott Chamberlain January 26, 2013 . . R API ropensci .
Resolving species names when you have a lot of them by Scott Chamberlain January 25, 2013 . . R ropensci taxize taxonomic .
Open Science Challenge by Scott Chamberlain January 8, 2013 . . R ropensci .
Is invasive? by Scott Chamberlain December 13, 2012 . . R ropensci taxize invasive .
Shiny apps are awesome by Scott Chamberlain December 10, 2012 . . R RStudio ropensci shiny .
One R package for all your taxonomic needs by Scott Chamberlain December 6, 2012 . . R open source data taxonomy ropensci ritis taxize .
Altecology, a call to unconference action by Scott Chamberlain November 15, 2012 . . meetings open access unconference data ropensci .
Displaying Your Data in Google Earth Using R2G2 by Pascal Mickelson October 24, 2012 . . R ecology mapping visualization google earth KML .
Getting taxonomic names downstream by Scott Chamberlain October 16, 2012 . . R open access data taxonomy ropensci ritis taxize .
Exploring phylogenetic tree balance metrics by Scott Chamberlain October 10, 2012 . . R phylogenetic tree shape .
GBIF biodiversity data from R - more functions by Scott Chamberlain October 8, 2012 . . R open access data GBIF biodiversity macroecology ropensci .
Vertnet - getting vertebrate museum record data and a quick map by Scott Chamberlain September 19, 2012 . . R ropensci open access data API .
Getting data from figures in published papers by Scott Chamberlain September 18, 2012 . . R open access data digitize API figshare meta-analysis .
Scholarly metadata from R by Scott Chamberlain September 17, 2012 . . R open access data metadata OAI-PMH .
Getting data on your government by Scott Chamberlain September 1, 2012 . . R government nytimes sunlightlabs API transparency .
Getting ecology and evolution journal titles from R by Scott Chamberlain August 31, 2012 . . R altmetrics ecology evolution doi .
Ecology unconference at ESA 2013 by Scott Chamberlain August 30, 2012 . . science ecology unconference online .
Making matrices with zeros and ones by Scott Chamberlain August 30, 2012 . . R matrix simulation .
ggplot2 maps with insets by Scott Chamberlain August 22, 2012 . . ggplot2 map gridExtra inset R .
Hitting the Global Names Resolver API by Scott Chamberlain July 20, 2012 . . API ropensci taxonomic resolve taxize ropensci taxize .
Recent R packages for ecology and evolution by Scott Chamberlain June 14, 2012 . . R python ecology evolution .
Visualize your Github stats (forks and watchers) in a browser with R! by Scott Chamberlain May 5, 2012 . . datavisualization ggplot2 opencpu.org github .
mvabund - new R pkg for multivariate abundance data by Scott Chamberlain March 19, 2012 . . datavisualization abundance R .
Journal Articles Need Interactive Graphics by Pascal Mickelson February 25, 2012 . . datavisualization publishing interactivegraphics .
Take the INNGE survey on math and ecology by Scott Chamberlain February 17, 2012 . . R math statistics ecology .
Scraping Flora of North America by Scott Chamberlain January 27, 2012 . . R scraping .
RNetLogo - A package for running NetLogo from R by Scott Chamberlain January 23, 2012 . . NetLogo R .
Taking a Closer Look at Peer Review by Pascal Mickelson January 16, 2012 . . thoughts publishing peerreview .
Function for phylogeny resolution by Scott Chamberlain January 13, 2012 . . R ape phylogenetics .
Moving from blogger and wordpress to jekyll by Scott Chamberlain January 11, 2012 . . thoughts blogger wordpress jekyll .
Presenting results of logistic regression by Scott Chamberlain January 10, 2012 . . ggplot2 gridExtra R .
Testing twitterfeed by Scott Chamberlain January 8, 2012 . . .
Testing new website by Scott Chamberlain January 6, 2012 . . .
Weecology can has new mammal dataset by Scott Chamberlain December 29, 2011 . . Datasets ggplot2 plyr R ropensci stringr treebase weecology .
Recology is 1 yr old by Scott Chamberlain December 23, 2011 . . ggplot2 Evolution Ecology R .
Dynamic views don't support javascript-so reverting back to simple views by Scott Chamberlain December 22, 2011 . . .
I Work For The Internet ! by Scott Chamberlain December 13, 2011 . . lubridate ggplot2 twitteR plyr R .
LondonR meetings presentations by Scott Chamberlain December 11, 2011 . . segue LondonR EC2 R .
rOpenSci won 3rd place in the PLoS-Mendeley Binary Battle! by Scott Chamberlain November 30, 2011 . . packages rmendeley openaccess ropensci rplos R .
Public vote open for Mendely-PLoS Binary Battle: vote rOpenSci! by Scott Chamberlain November 19, 2011 . . .
My talk on doing phylogenetics in R by Scott Chamberlain November 18, 2011 . . packages phylocom tutorials phangorn Phylogenetics R geiger ggplot2 Evolution ape phytools Picante sciencetalks .
Check out a video of my research at RocketHub by Scott Chamberlain November 1, 2011 . . begging .
My little presentation on getting web data through R by Scott Chamberlain October 28, 2011 . . ggplot2 tutorials API codedev sciencetalks R ITIS Datasets .
Two new rOpenSci R packages are on CRAN by Scott Chamberlain October 27, 2011 . . packages Ecology codedev R .
Two-sex demographic models in R by Scott Chamberlain October 26, 2011 . . Papers Ecology R .
New food web dataset by Scott Chamberlain October 14, 2011 . . ggplot2 Networks igraph R .
Phylogenetic community structure: PGLMMs by Scott Chamberlain October 13, 2011 . . Evolution Papers Ecology Statistics Picante R .
R talk on regular expressions (regex) by Scott Chamberlain October 6, 2011 . . regex sciencetalks R .
R tutorial on visualizations/graphics by Scott Chamberlain September 30, 2011 . . tutorials sciencetalks R .
Short on funding? Can't get a grant? Crowdfunding! #SciFund by Scott Chamberlain September 27, 2011 . . crowdfunding .
Ten Simple Rules for OA Publishers talk by Philip Bourne by Scott Chamberlain September 23, 2011 . . openaccess sciencetalks .
@drewconway interview on @DataNoBorders at the Strata conference by Scott Chamberlain September 22, 2011 . . openaccess API DataWithoutBorders sciencetalks .
Open science talk by Carl Boettiger by Scott Chamberlain September 22, 2011 . . openaccess Evolution Ecology sciencetalks .
My take on an R introduction talk by Scott Chamberlain September 9, 2011 . . openaccess Methods sciencetalks R .
A Data Visualization Book by Scott Chamberlain September 8, 2011 . . .
FigShare Talk by Scott Chamberlain September 8, 2011 . . openaccess vime sciencetalks .
Jonathan Eisen on the Fourth Domain and Open Science by Scott Chamberlain September 6, 2011 . . vimeo Evolution Phylogenetics sciencetalks .
rnpn: An R interface for the National Phenology Network by Scott Chamberlain August 31, 2011 . . ropensci API Ecology R Datasets .
Tenure track position in systematics at the University of Vermont by Scott Chamberlain August 22, 2011 . . Evolution jobs Phylogenetics R .
Thursday at #ESA11 by Scott Chamberlain August 12, 2011 . . Meetings Evolution Ecology sciencetalks .
Wednesday at #ESA11 by Scott Chamberlain August 11, 2011 . . openaccess Meetings Evolution Ecology sciencetalks .
Monday at #ESA11 by Scott Chamberlain August 8, 2011 . . openaccess Meetings Evolution Ecology sciencetalks .
(#ESA11) rOpenSci: a collaborative effort to develop R-based tools for facilitating Open Science by Scott Chamberlain August 8, 2011 . . openaccess Evolution API Ecology R Datasets .
Blogging/tweeting from #ESA11 by Scott Chamberlain July 31, 2011 . . openaccess Meetings Ecology sciencetalks .
Models in Evolutionary Ecology seminar, organized by Timothee Poisot by Scott Chamberlain July 18, 2011 . . Meetings Evolution Ecology sciencetalks .
Archiving ecology/evolution data sets online by Scott Chamberlain July 15, 2011 . . openaccess Datasets .
CRdata vs. Cloudnumbers by Scott Chamberlain July 14, 2011 . . cloudcomputing R .
rbold: An R Interface for Bold Systems barcode repository by Scott Chamberlain June 28, 2011 . . openaccess API R Datasets .
iEvoBio 2011 Synopsis by Scott Chamberlain June 22, 2011 . . openaccess Meetings Methods Ecology Phylogenetics R Datasets .
PLoS journals API from R: "rplos" by Scott Chamberlain June 21, 2011 . . openaccess API Papers R .
ggplot2 talk by Hadley Whickam at Google by Scott Chamberlain June 17, 2011 . . ggplot2 Statistics plyr reshape2 .
OpenStates from R via API: watch your elected representatives by Scott Chamberlain June 10, 2011 . . R Datasets .
Just turned on 'mobile template' for this blog, let me know if it works by Scott Chamberlain June 9, 2011 . . .
> 10,000 visits to Recology!!!! by Scott Chamberlain June 9, 2011 . . .
How to fit power laws by Scott Chamberlain June 7, 2011 . . Methods Papers Statistics R .
searching ITIS and fetching Phylomatic trees by Scott Chamberlain June 3, 2011 . . Phylogenetics taxize R ITIS .
phylogenetic signal simulations by Scott Chamberlain May 18, 2011 . . ggplot2 ape Phylogenetics .
A simple function for plotting phylogenies in ggplot2 by Scott Chamberlain May 17, 2011 . . ggplot2 Phylogenetics R .
plyr's idata.frame VS. data.frame by Scott Chamberlain May 13, 2011 . . plyr R .
google reader by Scott Chamberlain May 12, 2011 . . .
Comparison of functions for comparative phylogenetics by Scott Chamberlain May 11, 2011 . . Evolution ape Phylogenetics R motmot .
RHIPE package in R for interfacing between Hadoop and R by Scott Chamberlain May 4, 2011 . . Methods .
Treebase trees from R by Scott Chamberlain May 3, 2011 . . Phylogenetics R .
Processing nested lists by Scott Chamberlain April 28, 2011 . . R .
Running Phylip's contrast application for trait pairs from R by Scott Chamberlain April 26, 2011 . . Phylogenetics R .
Phylometa from R: Randomization via Tip Shuffle by Scott Chamberlain April 16, 2011 . . meta-analysis Methods Evolution Phylogenetics R .
RStudio Beta 2 is Out! by Scott Chamberlain April 11, 2011 . . .
Adjust branch lengths with node ages: comparison of two methods by Scott Chamberlain April 10, 2011 . . phylocom Methods Evolution Phylogenetics R .
Phylometa from R - UDPATE by Scott Chamberlain April 1, 2011 . . ggplot2 meta-analysis Phylogenetics R .
Bio-ORACLE by Scott Chamberlain March 25, 2011 . . .
basic ggplot2 network graphs - ver2 by Scott Chamberlain March 23, 2011 . . ggplot2 bipartite Networks igraph R .
basic ggplot2 network graphs by Scott Chamberlain March 17, 2011 . . ggplot2 bipartite Networks igraph R .
Species abundance distributions and basketball by Scott Chamberlain March 13, 2011 . . Papers Ecology .
cloudnumbers.com by Scott Chamberlain March 11, 2011 . . Methods .
Five ways to visualize your pairwise comparisons by Scott Chamberlain March 5, 2011 . . ggplot2 Methods lattice car R .
Check out Phyloseminar.org by Scott Chamberlain March 4, 2011 . . Evolution Phylogenetics .
RStudio by Scott Chamberlain February 28, 2011 . . .
R overtakes SAS in popularity by Scott Chamberlain February 25, 2011 . . .
Phenotypic selection analysis in R by Scott Chamberlain February 24, 2011 . . Methods Evolution R .
Phylogenetic analysis with the phangorn package: an example by Scott Chamberlain February 21, 2011 . . Evolution Papers phangorn Phylogenetics R .
Farmer's markets data by Scott Chamberlain February 16, 2011 . . ggplot2 Datasets .
Troubling news for the teaching of evolution by Scott Chamberlain February 9, 2011 . . ggplot2 Policy Evolution Ecology plyr R Datasets .
Plants are less sex deprived when next to closely related neighbors by Scott Chamberlain February 1, 2011 . . .
Good riddance to Excel pivot tables by Scott Chamberlain January 30, 2011 . . plyr reshape2 R .
R and Google Visualization API: Fish harvests by Scott Chamberlain January 17, 2011 . . ggplot2 Ecology GoogleVis R Datasets .
R and Google Visualization API: Wikispeedia by Scott Chamberlain January 17, 2011 . . GoogleVis R .
Bipartite networks and R by Scott Chamberlain January 14, 2011 . . Networks R .
Just for fun: Recovery.gov data snooping by Scott Chamberlain January 11, 2011 . . ggplot2 R Datasets .
R and Google Visualization API by Scott Chamberlain January 8, 2011 . . Ecology GoogleVis R .
Ecological networks from abundance distributions by Scott Chamberlain January 6, 2011 . . Ecology Networks R .
R-bloggers by Scott Chamberlain January 5, 2011 . . R .
New approach to analysis of phylogenetic community structure by Scott Chamberlain January 5, 2011 . . Evolution Papers Ecology Phylogenetics Picante R .
Ngram ecological terms by Scott Chamberlain December 29, 2010 . . .
Phylogenetic meta-analysis in R using Phylometa by Scott Chamberlain December 28, 2010 . . ggplot2 Evolution Ecology Phylogenetics R .
A new blog about using R for ecology and evolution by Scott Chamberlain December 27, 2010 . . Evolution Ecology R .