R Resources
R IDEs
R Help
R Taskviews
Ecology
Phylogenetics
Other
R Development Tools
IDE's (Integrated Development Environments)
RStudio:
http://www.rstudio.org/
Tinn-R:
http://www.sciviews.org/Tinn-R/
Graphical User Interface's
StatET:
http://www.walware.de/goto/statet
Eclipse:
http://www.eclipse.org/
R Commander:
http://socserv.mcmaster.ca/jfox/Misc/Rcmdr/
JGR:
http://cran.r-project.org/web/packages/JGR/index.html
Deducer:
http://www.deducer.org/pmwiki/pmwiki.php?n=Main.
DeducerManual
Rattle:
http://rattle.togaware.com/
RedR:
http://www.red-r.org/
Text Editor's
SublimeText2 (aka ST2)
http://www.sublimetext.com/
- It does cost $$, but well worth it - and get Karthik Ram's ST2 plugin to pass R code to an R console
here
TextWrangler:
http://www.barebones.com/products/textwrangler/
Notepad++:
http://notepad-plus-plus.org/
, with Npp2r plugin:
http://sourceforge.net/projects/npptor/
R Help
Sign up for R-help mailing list here:
https://stat.ethz.ch/mailman/listinfo/r-help
-remember to read the posting guide before posting to the listserve
R-help
phylogenetics
:
https://stat.ethz.ch/mailman/listinfo/r-sig-phylo
R-help
ecology
:
https://stat.ethz.ch/mailman/listinfo/r-sig-ecology
R-help on
mixed effects models
:
https://stat.ethz.ch/mailman/listinfo/r-sig-mixed-models
R-help on
networks/graphs
:
https://stat.ethz.ch/mailman/listinfo/r-sig-networks
[all R-help listserves:
https://stat.ethz.ch/mailman/listinfo/
]
Stackoverflow:
http://stackoverflow.com/
, especially the
R tag
The R Journal:
http://journal.r-project.org/
Google groups, ggplot2:
http://groups.google.com/group/ggplot2?pli=1
R Graphical Manual:
http://rgm2.lab.nig.ac.jp/RGM2/images.php?show=all&pageID=935
R Bloggers:
http://www.r-bloggers.com/
R Graph Gallery:
http://addictedtor.free.fr/graphiques/
Examples of figures in both Lattice and ggplot2:
http://learnr.files.wordpress.com/2009/08/latbook_time1.pdf
Quick R:
http://www.statmethods.net/index.html
CrossValidated:
http://stats.stackexchange.com/
R Inferno (pdf document):
http://www.burns-stat.com/pages/Tutor/R_inferno.pdf
Hadley Whickam's short courses:
http://courses.had.co.nz/
R Taskviews
Analysis of Ecological and Environmental Data
Phylogenetics
Cluster Analysis
Analysis of Spatial Data
Multivariate Statistics
Statistical Genetics
Ecology
Noam Ross' blog
http://www.noamross.net/index.html
Carl Boettiger's Lab Notebook
http://carlboettiger.info/lab-notebook.html
rOpenSci
packages
and
related packages
Phylogenetics
R phylogenetics Wiki:
http://www.r-phylo.org/wiki/HowTo/Table_of_Contents
Bodega Phylogenetics Wiki:
http://bodegaphylo.wikispot.org/Front_Page
Phylogenetic signal:
http://bodegaphylo.wikispot.org/IV._Testing_Phylogenetic_Signal_in_R
Morphological Evolution:
http://bodegaphylo.wikispot.org/Morphological_evolution_in_R
Brownie (Brian O'Meara's program) tutorial:
http://bodegaphylo.wikispot.org/Morphological_Diversification_and_Rates_of_Evolution
Phyloseminar.org:
http://phyloseminar.org/
sometimes has a some R related stuff
Liam Revell's blog Phylogenetic Tools for Comparative Biology:
http://phytools.blogspot.com/2011/03/creating-star-phylogeny.html
Dechronization blog:
http://treethinkers.blogspot.com/
Other
Nice R Code site/blog by
Rich FitzJohn
and
Daniel Falster
(
http://nicercode.github.io/
The Cerebral Mastication blog has a nice list of R resources (
http://www.cerebralmastication.com/r-resources/
)
Pairach Piboonrungroj has a nice list of R tutorials (
here/
)
The Ecostudies blog R tricks (
http://pvanb.wordpress.com/links-2/r-tips-tricks/
)